CRAN release: 2024-02-21
- Fixed several inconsistencies between parameters naming in the functions used in the examples article and the main function in the package.
- Streamline the examples description to be short and organized.
- Added additional plotting case for example 7 for the additional parameters that has been added in the current version to the
Fixed and issue with the
plot_l2g()function for the cases when the
diseaseparameter were not selected. The previous function were plotting only top disease for one gene. The function now updated with two more parameters to expand the
plot_l2g()functionality for plotting disease agnostic scenario. These two parameters are:
1): Determines the number of top diseases to plot for each gene, ranked by L2G score. Increase this value to include more diseases in the analysis. Use in conjunction with being disease-agnostic to dynamically select the top diseases for each gene.
0.5): Sets the minimum L2G score threshold for diseases to be considered in the plot. Increasing this value can help reduce plot clutter by focusing on higher-confidence associations.
CRAN release: 2023-12-12
- Fixed an issue in the
variantInfofunction where the wrong variable (
result) was being referenced, leading to an ‘object not found’ error. Modified
variantInfo()to correctly process the API response data. Additionally, added checks to ensure that the results are not
NULLbefore processing, which improves the function’s robustness and error handling.
- Improved the
test plot_l2g.Rtest case to provide better error handling and diagnostic information. The test now uses a
tryCatchblock to gracefully handle errors and explicitly fail with a clear message, enhancing the reliability and maintainability of the test suite.
- Fixed the issue with
genesForVariant()on giving an error when using