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Query functions

colocalisationsForGene()
Retrieves Colocalisation Statistics for a Given Gene
genesForVariant()
Retrieves variant-surrounding genes with calculated statistics for causal gene prioritization.
gwasColocalisation()
Retrieve calculated GWAS colocalisation data
gwasColocalisationForRegion()
Retrieve GWAS colocalisation data for a genomic region .
gwasCredibleSet()
Retrieve GWAS credible set data
gwasRegional()
Retrieve GWAS summary statistics for a genomic region.
manhattan()
Retrieve GWAS summary statistics to create a Manhattan plot
overlapInfoForStudy()
Retrieves overlap info for a study and a list of studies
pheWAS()
Retrieve PheWAS (Phenome Wide Association Studies) data for a variant.
qtlColocalisationVariantQuery()
Retrieve QTL colocalisation results of a variant
qtlCredibleSet()
Retrieve calculated QTL summary statistics for credible variant set.
studiesAndLeadVariantsForGeneByL2G()
Retrieve "locus-to-gene" (L2G) model summary data for a gene.
studyLocus2GeneTable()
Retrieve the locus-to-gene (L2G) data table for loci genes.
tagVariantsAndStudiesForIndexVariant()
Retrieves tag variants and studies for a given index variant.
indexVariantsAndStudiesForTagVariant()
Retrieve population-level summary GWAS statistics.
topOverlappedStudies()
Retrieve top studies having overlap in identified loci.
getLociGenes()
Retrieve summary information of the genes in a locus
geneInfo()
Retrieve gene summary information.
studyInfo()
Retrieve study summary information.
variantInfo()
Retrieves information about a variant.
studyVariants()
Retrieves all variants for a study.
chemblQuery()
Retrieve ChEMBL data for a specified gene and disease.
clinvarQuery()
Retrieve ClinVar data for a specified gene and disease.
compGenomicsQuery()
Retrieve Comparative Genomics data for a specified gene.
geneticConstraintQuery()
Retrieve Genetic Constraint data for a specified gene.
knownDrugsQuery()
Retrieve Known Drugs data for a specified gene.
mousePhenotypesQuery()
Retrieve Mouse Phenotypes data for a specified gene.

Plotting functions

plot_coloc()
Scatter plot of colocalisations for gene and reported traits.
plot_l2g()
Radar plot for L2G partial scores from studiesAndLeadVariantsForGeneByL2G()
plot_manhattan()
Plot results from manhattan()
plot_phewas()
Plot PheWAS() results.

Custom query function

run_custom_query()
Running custom GraphQL queries