Provided with a study ID and a lead variant ID, this function returns a data frame consisting of all the associated credible set tag variants with the corresponding statistical data.
Arguments
- study_id
Character: Study ID(s) generated by Open Targets Genetics (e.g GCST90002357).
- variant_id
Character: generated ID for variants by Open Targets Genetics (e.g. 1_154119580_C_A) or rsId (rs2494663).
Value
Returns a data frame of results from the credible set of variants for a specific lead variant with the following columns:
tagVariant.id
: Data frame. A table of IDs of the tag variant.tagVariant.rsId
: Character vector. rsID of the tag variant.beta
: Numeric. Beta value.postProb
: Numeric. Posterior probability.pval
: Numeric. P-value.se
: Numeric. Standard error.MultisignalMethod
: Character vector. Multisignal method.logABF
: Numeric. Logarithm of approximate Bayes factor.is95
: Logical. Indicates if the variant has a 95is99
: Logical. Indicates if the variant has a 99